Swedish Pathogens Portal

Interactive visualisations of pathogen surveillance and research data. Explore trends, compare datasets, and access up-to-date summaries from Swedish and international sources.

SLU-SEEC Wastewater Surveillance

Explore pathogens levels in wastewater across Sweden. Weekly data from SLU-SEEC tracks pathogens trends, covering a significant portion of the population, and assists in predicting potential outbreaks.

SARS-CoV-2 whole genome sequencing (Region Uppsala)

Surveillance of viral genome sequences is crucial in tracking the spread of viral variants. This dashboard shows whole-genome sequencing data generated by Uppsala University Hospital.

Serology tests for SARS-CoV-2 at SciLifeLab

The dashboard displays the SARS-CoV-2 serology tests completed over time at the SciLifeLab Autoimmunology and Serology Profiling unit.

Curated data highlights and editorials from the pathogen research community. Stay informed about new findings, methods, and perspectives in pandemic preparedness.

23 April 2026 Data Highlight

Expanding the genomic landscape of Pseudomonas aeruginosa clone C

A recent study delivers whole genome sequences of three Pseudomonas aeruginosa clone C strains isolated from distinct sources.

Infectious diseases

23 April 2026 Editorial

Mind the Gap: How high-resolution omics is transforming our understanding of malaria transmission biology

High-resolution omics approaches are uncovering critical bottlenecks in malaria transmission, providing new insights into host–parasite interactions and opportunities for next-generation interventions.

Infectious diseases

30 March 2026 Data Highlight

Multidrug‑resistant Enterobacterales in Swedish wastewater effluent

The recent appearance of Carbapenem‑resistant Enterobacterales (CRE) at a wastewater treatment plant indicates a need for integrated surveillance of resistance genes across discipline.

Antibiotic resistance

Browse research areas and pathogen themes. Each topic brings together datasets, guidance, and resources to support your work in surveillance, identification, and investigation.

Antibiotic resistance

Antibiotic resistance is a global health threat. It occurs when microorganisms develop resistance to antibiotics, impacting healthcare and food security. Monitoring, research, and policies to prevent it are crucial to combat resistance and develop effective treatments.

COVID-19

COVID-19, caused by SARS-CoV-2, caused a global pandemic that challenged society worldwide. Vaccines are crucial, but research is ongoing to enable early detection, identify variants, develop treatments, and ensure future preparedness.

Enteric viruses

Enteric viruses spread primarily through faecal-oral route, causing enteric disease (e.g. nausea, diarrhea, vomiting, abdominal pain). They include calicivirus, adenoviruses, astroviruses, rotaviruses, hepatitis viruses, and enteroviruses.