Swedish Pathogens Portal

Interactive visualisations of pathogen surveillance and research data. Explore trends, compare datasets, and access up-to-date summaries from Swedish and international sources.

SLU-SEEC Wastewater Surveillance

Explore pathogens levels in wastewater across Sweden. Weekly data from SLU-SEEC tracks pathogens trends, covering a significant portion of the population, and assists in predicting potential outbreaks.

SARS-CoV-2 whole genome sequencing (Region Uppsala)

Surveillance of viral genome sequences is crucial in tracking the spread of viral variants. This dashboard shows whole-genome sequencing data generated by Uppsala University Hospital.

Serology tests for SARS-CoV-2 at SciLifeLab

The dashboard displays the SARS-CoV-2 serology tests completed over time at the SciLifeLab Autoimmunology and Serology Profiling unit.

Curated data highlights and editorials from the pathogen research community. Stay informed about new findings, methods, and perspectives in pandemic preparedness.

27 August 2026 Data Highlight

A New MLST Scheme for Tracking Giardia duodenalis Assemblage B Outbreaks

A novel seven-marker MLST scheme enhances molecular typing of Giardia duodenalis assemblage B, improving outbreak detection and epidemiological surveillance.

Infectious diseases

29 June 2026 Data Highlight

Rapid microfluidic approach to detect hidden antibiotic resistance in bloodstream infections

A droplet microfluidics platform combined with image texture analysis enables rapid detection of rare antibiotic-resistant bacterial subpopulations that are often missed by standard diagnostic methods

Antibiotic resistance

22 May 2026 Data Highlight

Exploring the Influenza vaccine effectiveness in European children

Influenza vaccination provided strong protection against infection in European children across two recent seasons, supporting its role in reducing pediatric disease burden.

Influenza

Browse research areas and pathogen themes. Each topic brings together datasets, guidance, and resources to support your work in surveillance, identification, and investigation.

Antibiotic resistance

Antibiotic resistance is a global health threat. It occurs when microorganisms develop resistance to antibiotics, impacting healthcare and food security. Monitoring, research, and policies to prevent it are crucial to combat resistance and develop effective treatments.

COVID-19

COVID-19, caused by SARS-CoV-2, caused a global pandemic that challenged society worldwide. Vaccines are crucial, but research is ongoing to enable early detection, identify variants, develop treatments, and ensure future preparedness.

Enteric viruses

Enteric viruses spread primarily through faecal-oral route, causing enteric disease (e.g. nausea, diarrhea, vomiting, abdominal pain). They include calicivirus, adenoviruses, astroviruses, rotaviruses, hepatitis viruses, and enteroviruses.