Swedish Pathogens Portal

Interactive visualisations of pathogen surveillance and research data. Explore trends, compare datasets, and access up-to-date summaries from Swedish and international sources.

SLU-SEEC Wastewater Surveillance

Explore pathogens levels in wastewater across Sweden. Weekly data from SLU-SEEC tracks pathogens trends, covering a significant portion of the population, and assists in predicting potential outbreaks.

SARS-CoV-2 whole genome sequencing (Region Uppsala)

Surveillance of viral genome sequences is crucial in tracking the spread of viral variants. This dashboard shows whole-genome sequencing data generated by Uppsala University Hospital.

Serology tests for SARS-CoV-2 at SciLifeLab

The dashboard displays the SARS-CoV-2 serology tests completed over time at the SciLifeLab Autoimmunology and Serology Profiling unit.

Curated data highlights and editorials from the pathogen research community. Stay informed about new findings, methods, and perspectives in pandemic preparedness.

26 February 2026 Editorial

Antibiotic resistance does not recognise disciplinary borders: The Uppsala Antibiotic Center’s approach to research and education

Building a cross-disciplinary and intergenerational community of scholars to confront antibiotic resistance.

Antibiotic resistance

17 February 2026 Editorial

Influenza A(H3N2) subclade K: when “seasonal” stops being predictable

A perspective on the potential for influenza viruses to be the next pandemic threat and how to be better prepared for the next pandemic.

Influenza

29 January 2026 Data Highlight

Host range expansion in Giardia duodenalis linked to Muller's Ratchet

A recently derived asexual lineage of Giardia reveals how mutation accumulation and loss of host-specific adaptations can reshape parasite ecology, offering new insight into the evolutionary forces governing host-range expansion.

Infectious diseases

Browse research areas and pathogen themes. Each topic brings together datasets, guidance, and resources to support your work in surveillance, identification, and investigation.

Antibiotic resistance

Antibiotic resistance is a global health threat. It occurs when microorganisms develop resistance to antibiotics, impacting healthcare and food security. Monitoring, research, and policies to prevent it are crucial to combat resistance and develop effective treatments.

COVID-19

COVID-19, caused by SARS-CoV-2, caused a global pandemic that challenged society worldwide. Vaccines are crucial, but research is ongoing to enable early detection, identify variants, develop treatments, and ensure future preparedness.

Enteric viruses

Enteric viruses spread primarily through faecal-oral route, causing enteric disease (e.g. nausea, diarrhea, vomiting, abdominal pain). They include calicivirus, adenoviruses, astroviruses, rotaviruses, hepatitis viruses, and enteroviruses.