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Swedish Pathogens Portal SciLifeLab

Dashboards

Data dashboards are pages that promote data and other research resources developed by projects involving Swedish researchers or institutes. The dashboards provide context for the resource, and usually dynamic data visualisations.

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SLU-SEEC Wastewater Surveillance
Active
SLU-SEEC Wastewater Surveillance
Explore pathogens levels in wastewater across Sweden. Weekly data from SLU-SEEC tracks pathogens trends, covering a significant portion of the population, and assists in predicting potential outbreaks.
Register-based COVID-19 vaccination study (RECOVAC)
Active
Register-based COVID-19 vaccination study (RECOVAC)
Dedicated to the work of the register-based large-scale national population study to monitor COVID-19 vaccination effectiveness and safety (RECOVAC) project.
COVID-19 Infectious diseases
SARS-CoV-2 Variant Competition
Active
SARS-CoV-2 Variant Competition
Estimates of SARS-CoV-2 variant frequencies and growth rate advantages from global SARS-CoV-2 genotype sequencing data.
COVID-19 Infectious diseases
SARS-CoV-2 serology tests by the SciLifeLab Autoimmunity and Serology Profiling unit
Active
SARS-CoV-2 serology tests by the SciLifeLab Autoimmunity and Serology Profiling unit
The dashboard displays the SARS-CoV-2 serology tests completed over time at the SciLifeLab Autoimmunology and Serology Profiling unit. The number of tests in total and the amount of positive/negative tests over time are shown.
COVID-19 Infectious diseases
SARS-CoV-2 whole genome sequencing (Region Uppsala)
Active
SARS-CoV-2 whole genome sequencing (Region Uppsala)
Surveillance of viral genome sequences is crucial in tracking the spread of viral variants. This dashboard shows whole-genome sequencing data generated by Uppsala University Hospital.
COVID-19 Infectious diseases
Swedish COVID-19 publications over 5 years
Historic
Swedish COVID-19 publications over 5 years
A summary of the COVID-19 and SARS-CoV-2 publications produced involving at least one contributor from a Swedish university or research institute. Shows publications over time and key words/phrases within them.
COVID-19 Infectious diseases
Historic data of influenza virus in wastewater (SLU)
Historic
Historic data of influenza virus in wastewater (SLU)
Historic data of Influenza A and B virus levels in wastewater across Sweden from SLU-SEEC.
Influenza
Historic SARS-CoV-2 wastewater data (SEEC-SLU)
Historic
Historic SARS-CoV-2 wastewater data (SEEC-SLU)
Historic visualisations of SARS-CoV-2 levels in Swedish wastewater produced by SEEC-SLU, including combined national data and focused plots for Umeå and Örebro.
COVID-19 Infectious diseases
Multi-disease serology
Historic
Multi-disease serology
A summary of the progress in developing a multi-disease serology assay, a key component of pandemic preparedness. Information about externally produced antigens is also provided.
COVID-19 Enteric viruses Infectious diseases Influenza Mpox
Amount of enteric virus in wastewater (GU)
Historic
Amount of enteric virus in wastewater (GU)
Enteric virus levels in Gothenburg's wastewater, including norovirus and adenovirus. Data from the Norder group's weekly analysis at Ryaverket WWTP helps predict outbreaks and includes samples from surrounding municipalities.
Enteric viruses
Amount of SARS-CoV-2 in wastewater (GU)
Historic
Amount of SARS-CoV-2 in wastewater (GU)
This project is led by Professor Helene Norder (University of Gothenburg, GU), supported by colleagues at GU and Sahlgrenska University Hospital. Samples were collected by Lucica Enache at Ryaverket, Gryaab AB.
COVID-19 Infectious diseases
Post COVID-19 condition in Sweden: statistics and available data
Historic
Post COVID-19 condition in Sweden: statistics and available data
The Swedish Board of Health and Welfare (Socialstyrelsen) shares data on Post COVID-19 condition. Here, we show visualisations of data on symptoms, healthcare contacts, and geographic distribution, among other things.
COVID-19 Infectious diseases
Amount of SARS-CoV-2 in wastewater (SEEC-KTH)
Historic
Amount of SARS-CoV-2 in wastewater (SEEC-KTH)
SEEC-KTH wastewater monitoring project led by associate professor Zeynep Cetecioglu Gurol at KTH Royal Institute of Technology. Visualizations of SARS-CoV-2 levels in wastewater from Stockholm and Malmö, including both historic and recent data.
COVID-19 Infectious diseases
The Administration and Study of COVID-19 Vaccines in Sweden
Historic
The Administration and Study of COVID-19 Vaccines in Sweden
The Swedish Health Agency (Folkhälsomyndigheten) provide data and information related to COVID-19 in Sweden. Visualisations are shown on multiple aspects of vaccination coverage, like coverage in different counties.
COVID-19 Infectious diseases
CRUSH Covid data and dashboard, Region Uppsala
Historic
CRUSH Covid data and dashboard, Region Uppsala
CRUSH Covid maps outbreaks in Uppsala County by visualising the number of cases, test positivity, and geographic distribution, among other things. Data for each postal code is available for download and reuse.
COVID-19 Infectious diseases
COVID Symptom Study Sweden
Historic
COVID Symptom Study Sweden
The COVID Symptom Study Sweden (CSSS) collects data on COVID-19 prevalence, symptoms, and vaccinations through a smart phone app with over 200.000 users in Sweden. Raw data can be requested for use in research projects.
COVID-19 Infectious diseases
National Pandemic Centre SARS-CoV-2 (COVID-19) test statistics
Historic
National Pandemic Centre SARS-CoV-2 (COVID-19) test statistics
The National Pandemic Centre (NPC) conducted testing related to SARS-CoV-2 from the start of the pandemic. They show positive, negative, and inconclusive tests. This dashboard is historic, so no longer updated.
COVID-19 Infectious diseases
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